version=pmwiki-2.2.0-beta67 ordered=1 urlencoded=1 agent=Mozilla/5.0 (X11; U; Linux i686; en-US; rv:1.9.0.1) Gecko/2008072820 Firefox/3.0.1 author= charset=UTF-8 csum= ctime=1217924858 host=116.99.5.145 name=Main.Memo2007 passwdedit=$1$rH9OAAfj$hNpoMIeZRD7MtDfKXzIkA/ passwdread=$1$IoYidILC$ito21n3YHCe6StfFd2SfE1 rev=2 targets=Main.WRFV2,Main.JavaScript,Main.GSWP2,Inp.GSWP2,Main.AMeDAS,Main.TrendMicro text=* '''20071217: Ferret country border'''%0ayes? use geo_borders%0ayes? plot/ov/vs/line country_lon,country_lat%0a%0a* '''20071214: GSMAP'''%0aGlobal Rainfall Map, 0.1 degree resolution, 1-hourly, within 4 hours after observations%0ahttp://sharaku.eorc.jaxa.jp/GSMaP/%0a%0a* '''20071115: WRF'''%0a-> download WRF 2.2.1 and WPS (version of Nov 1st 2007)%0a** .bashrc, .cshrc: setenv NETCDF /usr/local/netcdf %0a** '''compile WRF''' (in WRF/)%0a--> setenv WRF_EM_CORE 1 %0a--> ./configure%0a--> ./compile %0a--> for real case:%0a---> ./compile em_real >& compile.log ==> time consuming. It everything is OK, we should see ndown.exe, nup.exe, real.exe. wrf.exe in main/%0a** '''compile WPS''' (in WPS/)%0a--> ./configure%0a---> '''Note:''' modify configure.wps, add "-L/usr/lib/gcc-lib/ia64-redhat-linux/3.2.3 -lg2c" to NCARG Lib option so util/plotfmt.exe and util/plotgrids.exe will be generated.%0a---> in .cshrc: setenv NCARG_ROOT /home/thanh/src/ncarg-4.4.1%0a %0a--> ./compile >& compile.log %0a---> If everything is OK, we should see geogrid.exe in geogrid/src/geogrid.exe, metgrid.exe in metgrid/src/metgrid.exe, and ungrib.exe in ungrib/src/ungrid.exe; and few utilities will be linked in util/ (avg_tsfc.exe, g1print.exe, g2print.exe, mod_levs.exe, plotfmt.exe, plotgrids.exe, rd_intermediate.exe)%0a---> '''Note:'''%0a----> NCAR Graphics is not required but recommended.%0a----> compile OK under csh, not bash %0a----> http://wrfportal.org/DomainWizard.html '''WRF domain wizard''' %0a%0a** '''Run GEOGRID'''%0a*** [[http://www.mmm.ucar.edu/wrf/OnLineTutorial/Basics/GEOGRID/ter_data.htm|Download]] the terrestrial input data %0a*** Edit namelist.wps%0a*** Run ./util/plotgrids.exe to ensure your domain is in the right location before running geogrid.exe%0a*** Run geogrid.exe (output is geo_em.dxx.nc - one file for each domain)%0a---> '''Note:''' Runing using mpirun -> qsub -q q4S geogrid.mpi.sub%0a---> q4.sub contains:%0a-----> #!/bin/sh %0a-----> #PBS -q q4S%0a-----> mpirun-np 4 dplace -s1 ./geogrid.exe%0a%0a** '''Run UNGRIB'''%0a*** download GFS data%0a*** ln $WPS/ungrib/Variable_Tables/Vtable.GFS Vtable%0a*** link_grip.csh $DIR_GFS%0a---> Note: to see the intermediate data: util/rd_intermediated.exe File or plotfmt.exe then idt gmeta%0a%0a** '''Run METGRID'''%0a*** edit namelist.wps%0a*** run metgrid.exe%0a---> '''Note:''' Runing using mpirun -> qsub -q q4S metgrid.mpi.sub%0a---> q4.sub contains:%0a-----> #!/bin/sh %0a-----> #PBS -q q4S%0a-----> mpirun-np 4 dplace -s1 ./metgrid.exe%0a** '''Run real.exe'''%0a*** go to WRFV2/run/%0a*** link the file generated by metgrid: ln -s $WPS/met_em* *%0a*** edit namelist.input%0a*** run real.exe (using mpi, qsub -q q4S real.mpi.sub)%0a%0a%0a%0a* '''20071113: TRAC'''%0a-> svn co http://hydro/svn/TRIP/trunk trip2%0a-> modify trip2 directory%0a-> svn add *.f%0a-> export SVN_EDITOR=/usr/bin/vim (in .bashrc)%0a-> svn ci%0a%0a-> (more about subversion: http://svnbook.red-bean.com/)%0a%0a* '''20071111: TRIP 2.0'''%0a%0a** found that the flwdir map created by Oki and Sud (1998) contains several points in the river channels which are directly connected to the sea without any outlet point (value =9)%0a%0a* '''200710: Pmwiki: regitration memo'''%0a * '''required field'''%0a (:input form "http://www.nhatviet.net/vset2007/pmwiki.php?action=mailform2" post:)%0a First Name * : (:input text name="name1" size=25:) \\%0a Last Name * : (:input text name="name2" size=25:) \\%0a Univ/Company*: (:input text name="affi" size=25:) \\%0a Email * : (:input text name="email" size=25 :)\\%0a Session you will join: (:input select name="major" value="Civil Engineering" label="Civil Engineering" :) %0a (:input select name="major" value="Economics" label="Economics" :)%0a (:input select name="major" value="Information Technology" label="Information Technology" :) \\%0a Will you join the banquet? : (:input select name="bq" value="Yes" label=Yes :)%0a (:input select name="bq" value="Yes" label=No :)\\%0a%0a (:input submit value="Register":)%0a (:input end:)%0a%0a(:html:)%0a%3cscript language="JavaScript" type="text/javascript">%0a// var frm = document.forms["form1"];%0a// var frmvalidator = new Validator("form1");%0a frmvalidator.addValidation("email","maxlen=50");%0a frmvalidator.addValidation("email","req");%0a frmvalidator.addValidation("email","email");%0a// alert("Thank you very much !");%0a%0a frmvalidator.addValidation("name1","req","Please enter your first name");%0a frmvalidator.addValidation("name1","maxlen=20", "Maxlen is 20");%0a frmvalidator.addValidation("name1","alpha");%0a%3c/script>%0a(:htmlend:)%0a%0a%0a* '''20070803: WRF memo'''%0a%0a%0a* '''20070703: TRIP2.0'''%0a** update calc_rivwth.f (dmis local to global)%0a--> W=max (10,(6.0+10^-4 *Qm,mouth))*Qm^0.5) %0a** update calc_rivdph.f (add dmis value) %0a* '''20070702: output of the MATSHIRO-NCC simulation''' %0a** /export/raid19/hjkim/NCC.4pv8ori/%0a** runoff : total runoff%0a** runofb : baseflow runoff -> surface runoff = runoff - runofb%0a** convert gtool format to netcdf: /home/thanh/ATRIP/inp/bin/NCC%0a%0a** 102 9999%0a*''' 20070625: TRIP 2.0'''%0a** groundwater parameters => change amplitude of river discharge, not phase%0a** in calc_rivslp.f: set minimum slope = 1.0E-008 instead of 1.0E-005%0a** Lucas-Picher et al.,2003 discussed about meandering and river slope%0a %0a*''' 20070622: GSWP2-B1 vs GSWP2-B0'''%0a** Rainfall in the upstream of Obidos, Amazon: different daily fluctuations; monthly phase seems to be OK!%0a** Discharge phase at Obidos: testing with different groundwater parameters.%0a%0a*''' 20070621: GSWP2'''%0a** [[http://haneda.tkl.iis.u-tokyo.ac.jp/gswp2/|http://haneda.tkl.iis.u-tokyo.ac.jp/gswp2/]]%0a** GSWP2-B1 data (rain & total runoff) are put in shui: /home/thanh/ATRIP/inp/GSWP2_B1/ORG/%0a%0a*''' 20070619:'''%0a** looking for river velocity data. %0a** How to correct AMeDAS data?%0a-->J. Meteor. Soc. Japan, Vol. 74, No. 4, pp. 459-480, 1996 Makihara, Y.\\%0aA Method for Improving Radar Estimates of Precipitation by Comparing Data from Radars and Raingauges%0a%0a*''' 20070618:'''%0a** basin mask program: shui: /home/thanh/ATRIP/obs/basinmsk/%0a%0a*''' 20070612:'''%0a** program to convert the GRDC Day format to netCDF (shui: /home/thanh/ATRIP/obs/grdcDay2nc.f).%0a%0a* '''20070611:'''%0a*** Download Hydrosheds: add hydrosheds link to trusted websites in TrendMicro, then follow the document.%0a*** 3, 15, 30 arc-second resolutions for Asia are available. %0a*** Using 30 arc-second data (~1km)%0a*** Waiting for 5 minute resolution!%0a%0a* '''2007/05/31''' '''Sim-CYCLE/TRIP kick-off meeting'''%0a** Time: 17h-19h%0a** Participants: Oki-sensei, Kanae-sensei, Itoh-san, Hanasaki-san, Thanh, Mouri-san, Kodama-san%0a** Current situation: Itoh-san developed Sim-Cycle which simulates soil erosion and eroded carbon but doesn't have yet a routing scheme to route sediments/carbon through the river channels => Coupling between Sim-CYCLE and ATRIP is necessary. %0a** Minimum target: route carbon to the river mouth%0a** Some details: %0a***Different grain sizes for sediments => different situations: big grains flow more deeply, and are easily deposited to the river bottom, etc. (Oki-sensei)%0a***In the current version of ATRIP, we don't have wetland yet. Some papers showed that a lot of sediments go to wetland (Itoh-san).%0a*** Equation to solve:\\%0a dS/dt= In + In'_uptream_' -Out - D'_decomposition_'\\%0awhere Out=f(Velocity, Discharge) & D'_decomposition_' provided by Mouri-san%0a*** Output from Sim-CYCLE: Annualy for soil erosion and carbon => Itoh-san will provide monthly output.%0a%0a** Who do what? %0a*** Kodama-san starts the study?%0a*** Modelling works can be done in collaboration with Thanh.%0a*** Mouri-san provides the necessary equations.%0a*** Thanh provides the manual of ATRIP in 2 weeks.%0a*** Itoh-san provides the outputs of Sim-CYCLE.%0a** Validation: use data from JEMS water project? time=1217925579 author:1217924858= diff:1217924858:1217924858:=1,172d0%0a%3c * '''20071217: Ferret country border'''%0a%3c yes? use geo_borders%0a%3c yes? plot/ov/vs/line country_lon,country_lat%0a%3c %0a%3c * '''20071214: GSMAP'''%0a%3c Global Rainfall Map, 0.1 degree resolution, 1-hourly, within 4 hours after observations%0a%3c http://sharaku.eorc.jaxa.jp/GSMaP/%0a%3c %0a%3c * '''20071115: WRF'''%0a%3c -> download WRF 2.2.1 and WPS (version of Nov 1st 2007)%0a%3c ** .bashrc, .cshrc: setenv NETCDF /usr/local/netcdf %0a%3c ** '''compile WRF''' (in WRF/)%0a%3c --> setenv WRF_EM_CORE 1 %0a%3c --> ./configure%0a%3c --> ./compile %0a%3c --> for real case:%0a%3c ---> ./compile em_real >& compile.log ==> time consuming. It everything is OK, we should see ndown.exe, nup.exe, real.exe. wrf.exe in main/%0a%3c ** '''compile WPS''' (in WPS/)%0a%3c --> ./configure%0a%3c ---> '''Note:''' modify configure.wps, add "-L/usr/lib/gcc-lib/ia64-redhat-linux/3.2.3 -lg2c" to NCARG Lib option so util/plotfmt.exe and util/plotgrids.exe will be generated.%0a%3c ---> in .cshrc: setenv NCARG_ROOT /home/thanh/src/ncarg-4.4.1%0a%3c %0a%3c --> ./compile >& compile.log %0a%3c ---> If everything is OK, we should see geogrid.exe in geogrid/src/geogrid.exe, metgrid.exe in metgrid/src/metgrid.exe, and ungrib.exe in ungrib/src/ungrid.exe; and few utilities will be linked in util/ (avg_tsfc.exe, g1print.exe, g2print.exe, mod_levs.exe, plotfmt.exe, plotgrids.exe, rd_intermediate.exe)%0a%3c ---> '''Note:'''%0a%3c ----> NCAR Graphics is not required but recommended.%0a%3c ----> compile OK under csh, not bash %0a%3c ----> http://wrfportal.org/DomainWizard.html '''WRF domain wizard''' %0a%3c %0a%3c ** '''Run GEOGRID'''%0a%3c *** [[http://www.mmm.ucar.edu/wrf/OnLineTutorial/Basics/GEOGRID/ter_data.htm|Download]] the terrestrial input data %0a%3c *** Edit namelist.wps%0a%3c *** Run ./util/plotgrids.exe to ensure your domain is in the right location before running geogrid.exe%0a%3c *** Run geogrid.exe (output is geo_em.dxx.nc - one file for each domain)%0a%3c ---> '''Note:''' Runing using mpirun -> qsub -q q4S geogrid.mpi.sub%0a%3c ---> q4.sub contains:%0a%3c -----> #!/bin/sh %0a%3c -----> #PBS -q q4S%0a%3c -----> mpirun-np 4 dplace -s1 ./geogrid.exe%0a%3c %0a%3c ** '''Run UNGRIB'''%0a%3c *** download GFS data%0a%3c *** ln $WPS/ungrib/Variable_Tables/Vtable.GFS Vtable%0a%3c *** link_grip.csh $DIR_GFS%0a%3c ---> Note: to see the intermediate data: util/rd_intermediated.exe File or plotfmt.exe then idt gmeta%0a%3c %0a%3c ** '''Run METGRID'''%0a%3c *** edit namelist.wps%0a%3c *** run metgrid.exe%0a%3c ---> '''Note:''' Runing using mpirun -> qsub -q q4S metgrid.mpi.sub%0a%3c ---> q4.sub contains:%0a%3c -----> #!/bin/sh %0a%3c -----> #PBS -q q4S%0a%3c -----> mpirun-np 4 dplace -s1 ./metgrid.exe%0a%3c ** '''Run real.exe'''%0a%3c *** go to WRFV2/run/%0a%3c *** link the file generated by metgrid: ln -s $WPS/met_em* *%0a%3c *** edit namelist.input%0a%3c *** run real.exe (using mpi, qsub -q q4S real.mpi.sub)%0a%3c %0a%3c %0a%3c %0a%3c * '''20071113: TRAC'''%0a%3c -> svn co http://hydro/svn/TRIP/trunk trip2%0a%3c -> modify trip2 directory%0a%3c -> svn add *.f%0a%3c -> export SVN_EDITOR=/usr/bin/vim (in .bashrc)%0a%3c -> svn ci%0a%3c %0a%3c -> (more about subversion: http://svnbook.red-bean.com/)%0a%3c %0a%3c * '''20071111: TRIP 2.0'''%0a%3c %0a%3c ** found that the flwdir map created by Oki and Sud (1998) contains several points in the river channels which are directly connected to the sea without any outlet point (value =9)%0a%3c %0a%3c * '''200710: Pmwiki: regitration memo'''%0a%3c * '''required field'''%0a%3c (:input form "http://www.nhatviet.net/vset2007/pmwiki.php?action=mailform2" post:)%0a%3c First Name * : (:input text name="name1" size=25:) \\%0a%3c Last Name * : (:input text name="name2" size=25:) \\%0a%3c Univ/Company*: (:input text name="affi" size=25:) \\%0a%3c Email * : (:input text name="email" size=25 :)\\%0a%3c Session you will join: (:input select name="major" value="Civil Engineering" label="Civil Engineering" :) %0a%3c (:input select name="major" value="Economics" label="Economics" :)%0a%3c (:input select name="major" value="Information Technology" label="Information Technology" :) \\%0a%3c Will you join the banquet? : (:input select name="bq" value="Yes" label=Yes :)%0a%3c (:input select name="bq" value="Yes" label=No :)\\%0a%3c %0a%3c (:input submit value="Register":)%0a%3c (:input end:)%0a%3c %0a%3c (:html:)%0a%3c %3cscript language="JavaScript" type="text/javascript">%0a%3c // var frm = document.forms["form1"];%0a%3c // var frmvalidator = new Validator("form1");%0a%3c frmvalidator.addValidation("email","maxlen=50");%0a%3c frmvalidator.addValidation("email","req");%0a%3c frmvalidator.addValidation("email","email");%0a%3c // alert("Thank you very much !");%0a%3c %0a%3c frmvalidator.addValidation("name1","req","Please enter your first name");%0a%3c frmvalidator.addValidation("name1","maxlen=20", "Maxlen is 20");%0a%3c frmvalidator.addValidation("name1","alpha");%0a%3c %3c/script>%0a%3c (:htmlend:)%0a%3c %0a%3c %0a%3c * '''20070803: WRF memo'''%0a%3c %0a%3c %0a%3c * '''20070703: TRIP2.0'''%0a%3c ** update calc_rivwth.f (dmis local to global)%0a%3c --> W=max (10,(6.0+10^-4 *Qm,mouth))*Qm^0.5) %0a%3c ** update calc_rivdph.f (add dmis value) %0a%3c * '''20070702: output of the MATSHIRO-NCC simulation''' %0a%3c ** /export/raid19/hjkim/NCC.4pv8ori/%0a%3c ** runoff : total runoff%0a%3c ** runofb : baseflow runoff -> surface runoff = runoff - runofb%0a%3c ** convert gtool format to netcdf: /home/thanh/ATRIP/inp/bin/NCC%0a%3c %0a%3c ** 102 9999%0a%3c *''' 20070625: TRIP 2.0'''%0a%3c ** groundwater parameters => change amplitude of river discharge, not phase%0a%3c ** in calc_rivslp.f: set minimum slope = 1.0E-008 instead of 1.0E-005%0a%3c ** Lucas-Picher et al.,2003 discussed about meandering and river slope%0a%3c %0a%3c *''' 20070622: GSWP2-B1 vs GSWP2-B0'''%0a%3c ** Rainfall in the upstream of Obidos, Amazon: different daily fluctuations; monthly phase seems to be OK!%0a%3c ** Discharge phase at Obidos: testing with different groundwater parameters.%0a%3c %0a%3c *''' 20070621: GSWP2'''%0a%3c ** [[http://haneda.tkl.iis.u-tokyo.ac.jp/gswp2/|http://haneda.tkl.iis.u-tokyo.ac.jp/gswp2/]]%0a%3c ** GSWP2-B1 data (rain & total runoff) are put in shui: /home/thanh/ATRIP/inp/GSWP2_B1/ORG/%0a%3c %0a%3c *''' 20070619:'''%0a%3c ** looking for river velocity data. %0a%3c ** How to correct AMeDAS data?%0a%3c -->J. Meteor. Soc. Japan, Vol. 74, No. 4, pp. 459-480, 1996 Makihara, Y.\\%0a%3c A Method for Improving Radar Estimates of Precipitation by Comparing Data from Radars and Raingauges%0a%3c %0a%3c *''' 20070618:'''%0a%3c ** basin mask program: shui: /home/thanh/ATRIP/obs/basinmsk/%0a%3c %0a%3c *''' 20070612:'''%0a%3c ** program to convert the GRDC Day format to netCDF (shui: /home/thanh/ATRIP/obs/grdcDay2nc.f).%0a%3c %0a%3c * '''20070611:'''%0a%3c *** Download Hydrosheds: add hydrosheds link to trusted websites in TrendMicro, then follow the document.%0a%3c *** 3, 15, 30 arc-second resolutions for Asia are available. %0a%3c *** Using 30 arc-second data (~1km)%0a%3c *** Waiting for 5 minute resolution!%0a%3c %0a%3c * '''2007/05/31''' '''Sim-CYCLE/TRIP kick-off meeting'''%0a%3c ** Time: 17h-19h%0a%3c ** Participants: Oki-sensei, Kanae-sensei, Itoh-san, Hanasaki-san, Thanh, Mouri-san, Kodama-san%0a%3c ** Current situation: Itoh-san developed Sim-Cycle which simulates soil erosion and eroded carbon but doesn't have yet a routing scheme to route sediments/carbon through the river channels => Coupling between Sim-CYCLE and ATRIP is necessary. %0a%3c ** Minimum target: route carbon to the river mouth%0a%3c ** Some details: %0a%3c ***Different grain sizes for sediments => different situations: big grains flow more deeply, and are easily deposited to the river bottom, etc. (Oki-sensei)%0a%3c ***In the current version of ATRIP, we don't have wetland yet. Some papers showed that a lot of sediments go to wetland (Itoh-san).%0a%3c *** Equation to solve:\\%0a%3c dS/dt= In + In'_uptream_' -Out - D'_decomposition_'\\%0a%3c where Out=f(Velocity, Discharge) & D'_decomposition_' provided by Mouri-san%0a%3c *** Output from Sim-CYCLE: Annualy for soil erosion and carbon => Itoh-san will provide monthly output.%0a%3c %0a%3c ** Who do what? %0a%3c *** Kodama-san starts the study?%0a%3c *** Modelling works can be done in collaboration with Thanh.%0a%3c *** Mouri-san provides the necessary equations.%0a%3c *** Thanh provides the manual of ATRIP in 2 weeks.%0a%3c *** Itoh-san provides the outputs of Sim-CYCLE.%0a%3c ** Validation: use data from JEMS water project?%0a\ No newline at end of file%0a host:1217924858=116.99.5.145